020702Ra3-1	020708Ra3-10ug1	020708Ra5-10ug1	020724RAcy5-1
Block	Column	Row	Cluster ID	Name (or similarity to known gene products)	Clone ID	Arithmetic Average	Geometrical Average		Ratio of Medians/0.797927461139896	Ratio of Medians/0.696912396255549	Ratio of Med/1.16070239062923	Ratio of Medians/2.09267989514162
45	11	11	13982	CiCyp26, cytochrome P450 RA degrading enzyme	citb029d20	5.39375984	4.828739758	A	10.00938472	4.019859777	2.922697611	4.62309725
36	5	4	04977	Putative RING-H2 finger protein	cilv006f16	3.14423649	2.802509951	○	499	2138	4.284569138	15.629	5.369622363	8958	13346	1.4898415	2.009	2.1377744	4376	1059	4.1322002	3.40875	3.5600859	4833	1530	3.1588235	0.298	1.5094633
43	11	3	01311	Styela clava intermediate filament protein D	cilv003p09	2.954229531	2.712271056	A	4.072400573	4.128180331	2.03279539	1.583541832
29	8	6	13207	Voltage-gated potassium channel DRK1	cilv026c23	2.96193927	2.685547834	A	3.474745372	4.672129895	2.319613515	1.3812683
29	5	1	10553	Orphan nuclear receptor TR4	cicl056d13	2.693761417	2.586155156	A	2.980161571	3.835886248	1.906085027	2.05291282
25	2	3	04845	No similarity	cilv004n11	2.296332531	2.092778983	A	1.435776686	4.14796357	1.949132401	1.652457466
34	15	4	03348	Steroid hormone receptor-like protein RLD-1, oxysterols receptor LXR-alpha	cilv002c15	2.348752241	2.0059621	B	2.884109341	4.060025248	1.570291854	0.880582519
6	5	3	04817	Inward rectifier potassium channel protein	04817	2.044090245	1.937852596	A	2.467702536	2.901356698	1.427857034	1.379444712
26	3	9	00840	Sodium-dependent neurotransmitter transporter	citb005d05	2.067459033	1.931389541	A	2.607221751	1.979735629	2.675140537	1.007738217
4	10	2	02210	CiCyp26, cytochrome P450 RA degrading enzyme	cicl002j21	2.234000364	1.928226636	B	2.763342665	0.658148986	2.79478814	2.719721665
28	2	7	14629	Putative gene product similar to Ig superfamily protein, encoded by COS2.1 cosmid clone identified by Simmen et al.	cilv028p23	2.399501056	1.815053933	B	0.843034543	5.763718289	1.438420295	1.552831096
28	7	7	00968	Nuclear receptor COUP-TFII, COUP-TFI	cilv028c05	1.959622138	1.809218836	A	2.144283463	3.100677198	1.561554464	1.031973428
31	14	11	02553	No similarity	citb028f04	1.878527315	1.789852822	A	1.811461465	2.83465377	1.674167204	1.193826822
23	15	13	08230	UDP-glucose 6-dehydrogenase	cicl045c18	1.928493013	1.761954651	A	2.252027161	3.077841615	1.017336269	1.366767005
30	12	3	00016	Apolipophorin precursor	cilv002j08	2.466350476	1.756604047	B	5.277513145	2.910222148	1.1281688	0.549497809
18	15	14	10360	NADPH-flavin reductase	cicl046d12	2.006105597	1.719772665	B	0.610181364	1.856948577	2.805696769	2.751595678
41	2	6	14369	No similarity	cilv024j22	2.663450952	1.700157927	?	58	329	5.672413793	-0.156	7.108934171	6385	8842	1.3848081	1.851	1.987062	557	732	0.760929	-0.005319	0.6555763	2598	1376	1.8880814	1.425	0.9022313
9	4	9	08987	No similarity	cicl021d11	2.187207113	1.662017613	B	0.395528231	3.244551823	3.315312895	1.793435503
25	2	10	13275	Homo sapiens vesicle-associated membrane protein-1B, Homo sapiens synaptobrevin1	citb017o09	2.41233901	1.650681705	?	433	166	0.383371824	0	0.480459494	1962	1327	0.6763507	0.096	0.970496	959	164	5.847561	-65	5.0379503	2586	391	6.6138107	-0.035	3.1604503
25	12	6	14333	Leucine aminopeptidase	cilv023e14	1.846229161	1.650255467	A	3.408831169	1.193915018	1.726932209	1.055238246
17	9	8	05662	COP9 complex subunit 7	cicl016g13	1.881402484	1.599681157	B	0.725408709	1.124746701	2.67417234	3.001282187
26	14	13	10279	FGFR3/4 protein	citb039f04	2.036805797	1.583532467	B	0.792451109	1.175486306	4.761669972	1.417615801
12	3	7	05863	Hypothetical protein (C. elegans K06H7.3)	cicl014i15	1.984908308	1.580703051	B	0.515883901	1.290166714	2.908053471	3.225529149
26	7	1	12552	Hypothetical protein (Drosophila melanogaster CG16717), Homo sapiens adult brain protein 239	cicl051i17	2.28904564	1.579281256	B	0.484292993	1.169146118	5.508144247	1.994599203
32	1	3	01412	Oikopleura dioica similar to transmembrane receptor	cilv003f09	1.836740702	1.562324608	B	2.096340024	3.303495142	1.269413388	0.677714254
18	4	9	11361	Hypothetical protein (Homo sapiens FLJ20452)	cicl019l09	4.32230069	1.549146861	C	0.279212465	0.326946293	10.88930342	5.793740588
21	1	6	05829	No similarity	cicl014c01	3.703994412	1.537566206	C	0.120954699	0.986367777	7.222676617	6.485978556
30	5	3	00966	Chlamydomonas reinhardtii flagellar protofilament ribbon protein Rib43a	cilv003d18	2.375179754	1.519506972	B	1.695192372	6.261133485	1.078816395	0.465576765
17	2	1	03676	Euplotes octocarinatus ciliary WD-repeat protein, Lytechinus variegatus microtubule-associated protein	cicl002b01	2.689340858	1.50123314	B	0.183571377	1.418520435	5.78157836	3.373693261
5	1	8	11327	ATP synthase delta chain mitochondrial precursor	cicl019c22	2.967370547	1.500608062	B	0.164821546	1.378288416	7.245833625	3.080538601
21	2	4	05399	No similarity	cicl008b02	2.599757285	1.465541224	B	0.195403463	1.20400078	5.300012127	3.69961277
21	9	11	05610	Xenopus laevis growth and differentiation factor 6	cicl027m09	1.824939071	1.438811145	B	2.906391888	2.868793236	1.021285429	0.503285729
35	1	9	02579	No similarity	citb008n13	1.905641496	1.424346057	B	4.574203517	1.152295732	1.291384879	0.604681855
30	7	6			cilv021e09	1.817296367	1.421150478	B	3.890433669	0.985560292	1.80322142	0.589970087
27	13	3			cilv003k06	1.889519585	1.419585839	B	4.302363693	0.987316578	1.708961588	0.559436481
21	1	12	11771	No similarity	cicl045c10	2.049493201	1.415307672	B	0.287430742	1.264131885	3.353647775	3.2927624
22	3	4	05243	Mus musculus oral tumor suppressor homolog or doc-1 protein	cicl005k04	4.105732683	1.383859474	C	0.138051277	0.460146469	10.11953004	5.705202944
35	2	3	04833	No similarity	cilv004k02	2.089864467	1.359718658	B	0.437760842	5.544525195	1.121973594	1.255198235
12	1	9	11365	5Sa/antisecretory factor protein, 26S proteinase chain 5a	cicl019m07	3.808664984	1.35628458	C	0.180870785	0.348282892	6.763606133	7.941900126
17	6	12			cicl031g08	1.82835592	1.353803241	B	0.344230605	1.158801995	3.043632132	2.76675895
5	5	8	07316	Homo sapiens TRAP100	cicl019a02	2.407232554	1.352347231	B	0.159303224	1.288138114	4.750294181	3.431194696
18	5	9	11359	Cytoplasmic leucine-rich protein	cicl019k24	4.244433049	1.327873248	C	0.203652597	0.255036189	11.15088351	5.368159904
21	3	13			cicl049k10	1.869118688	1.314633997	B	0.284734337	1.210889812	2.461737527	3.519113076
15	14	1	03682	No similarity	cicl002b21	1.807150353	1.274425396	B	0.275671875	1.144152448	2.635869008	3.172908082
22	2	4	05245	Ciona savignyi Notch	cicl005k11	3.772325881	1.258750839	C	0.139868527	0.352536092	8.832582825	5.76431608
21	1	1	03729		cicl002i02	1.913811122	1.254907063	B	0.225954006	1.096469115	3.293905986	3.038915383
37	1	7	11663	Hypothetical membrane protein	cilv038g17	3.195620599	1.245277462	B	0.108738598	1.339382049	1.716759675	9.617602075
21	4	9			cicl022a09	1.839717476	1.229176988	B	0.241648671	1.035416063	2.689258329	3.392546839
41	1	7	13453		cilv035f11	1.894224618	1.225791561	B	0.739763709	5.192029305	0.524586573	1.120518888
21	3	7	06046	Hypothetical protein (Drosophila melanogaster CG10343)	cicl016m14	2.099959134	1.222731449	B	0.171332138	1.007013226	3.897274336	3.324216836
39	13	2	04926	No similarity	cicl061f20	2.17240267	1.222156605	B	0.726810254	0.735907976	6.59434805	0.6325444
46	6	13	07226	Probable translation initiation factor 3 subunit 10 (EIF-3 theta)	citb042j18	5.147385535	1.187627947	C	17.35533352	2.79114748	0.132045532	0.311015602
24	14	6	02702	Ciona intestinalis endostyle-specific protein, ribosomal protein S7	cicl009f12	6.358984368	1.163166959	C	14.52450175	10.67692688	0.0731542	0.161354638
23	10	5	02617	Ciona intestinalis endostyle-specific protein, small proline-rich protein 1A SPRR1a, Cornifin A	cicl010c06	3.055197975	1.150271127	C	4.580494017	7.12944385	0.147563426	0.363290608
41	2	8	00593	No similarity	citb002c02	5.029592924	1.134709687	C	8.208339961	11.6272297	0.090176591	0.192625442
4	3	9	07455	LN1, peroxisomal phytanoyl-CoA alpha-hydroxylase precursor (phytanic acid oxidase)	cicl019l13	3.957428768	1.120283821	C	0.303492804	0.1072732	4.384531755	11.03441731
37	1	3	07965		cilv005m04	1.627610788	1.116323268	C	0.882901968	0.503103602	0.810415256	4.314022327
21	12	6	02772	Homo sapiens Trip230	cicl010k17	3.783619821	1.090611961	C	3.666654904	11.0675366	0.128067841	0.272219941
13	15	7	05831	No similarity	cicl014c09	3.901417467	1.07785644	C	0.166045311	0.144664033	9.162169029	6.132791497
16	11	6	01330	Ribosomal protein S18	cicl009g04	3.954924714	1.058792966	C	7.335994118	8.150964619	0.084750629	0.24798949
5	1	6	05828	Mus musculus thyroid hormone receptor interactor protein	cicl014b12	3.463717323	1.049236679	C	0.160407305	0.176678335	8.467055097	5.050728555
36	9	11	02498	No similarity	citb013m17	3.768218641	1.031825282	C	5.096856299	9.624900927	0.087724845	0.263392492
14	15	8	05938	Drosophila melanogaster alien protein, COP9 complex homolog subunit 2	cicl015h09	2.564041469	1.029125222	C	0.248831404	0.189359317	4.368195913	5.449779241
4	1	9	11364	No similarity	cicl019m06	4.205883471	1.02392739	C	0.31056678	0.06430927	4.674197414	11.77446042
7	11	3	03853	Ribosomal protein L35	cicl003g09	4.603224196	1.022693149	C	0.234137892	0.066047358	5.697882481	12.41482905
4	13	9	11214	Type II membrane protein, putative secreted protein ZSIG9	cicl017l06	3.676626417	1.02037429	C	0.227651866	0.148935841	2.764413551	11.56550441
48	11	2	14460	No similarity	cicl058a02	4.985863862	1.003776765	C	13.26115457	6.425627972	0.060835278	0.195837629
19	13	6	02615	Ciona intestinalis endostyle-specific protein, Homo sapiens ZASP protein, LIM protein	cicl010a01	2.582152789	0.994509277	C	0.183938604	0.216658968	5.272352285	4.655661299
45	1	9	01731		citb011c06	1.15233008	0.99190607	C	2.177747745	0.462175239	0.89599278	1.073404557
31	4	10	14956		citb019l04	1.034349586	0.985950476	C	1.081419669	0.589698477	1.430148159	1.036132037
21	11	3	03865	Thyroid receptor interacting protein 3 (TRIP3)	cicl003h22	2.607831111	0.97488552	C	4.07603587	5.966534713	0.169052435	0.219701428
29	7	11	14966	No similarity	citb036c19	4.471052637	0.974360833	C	7.752400167	9.894145309	0.070145342	0.167519731
10	2	8	00160	Thyroid hormone receptor-associated protein complex component TRAP95	cicl017k09	2.437135523	0.974028907	C	0.233108512	0.177444487	4.866774162	4.47121493
2	4	9	06510	30S ribosomal protein S7 small chain precursor	cicl019l03	3.654718127	0.971885412	C	0.20571653	0.086859388	8.337554426	5.988742165
24	10	10	11423		cicl020n10	2.088651691	0.951000288	B	0.956565197	6.263151159	0.136785088	0.998105321
38	1	2	14497	No similarity	cicl059f24	4.00479905	0.943510531	C	11.05568425	4.715248929	0.109751977	0.138511044
41	1	5			cilv016j02	1.881567756	0.940800455	B	5.754344248	0.779716651	0.228682306	0.763527818
16	11	10			cicl020l19	1.889087929	0.93919651	B	1.156451273	5.264078093	0.126651894	1.009170458
48	6	12	14744	GTPase activating protein	citb040g22	4.553843956	0.899291619	C	12.39991259	5.572937976	0.048874171	0.193651089
39	5	10	03640	Hypothetical protein (Drosophila melanogaster CG14435)	citb019c05	4.27260249	0.87813273	C	7.502959377	9.378672471	0.054923102	0.153855009
26	9	8	02335		cilv039k18	0.909211183	0.872310488	C	1.121326043	0.591655403	1.191224024	0.732639264
47	1	4	07704		cilv011d18	1.912735958	0.867856832	B	0.771411354	6.177863802	0.28718243	0.414486246
44	3	6	00999	Suppressor of Fused	cilv019e05	0.846739032	0.7960488	C	0.923910305	0.435242911	0.84248651	1.185316403
35	9	6	06894		cilv023d13	0.806489662	0.783706328	C	0.820151957	0.519363783	1.006835072	0.879607837
35	12	11	13924		citb018f10	0.896559699	0.770702902	C	1.756636689	0.410265169	0.828304308	0.591032632
8	15	14	10722	RNA polymerase III	cicl047d12	0.856754217	0.748450447	C	0.683441559	0.362721612	0.801479253	1.579374446
34	12	11	01782		citb013h16	0.715307919	0.673137368	C	1.163115994	0.676215712	0.50545322	0.516446748
28	14	6	07781		cilv012n03	0.723883275	0.652528775	C	1.339913499	0.495427992	0.618916946	0.441274665
40	15	6	10604		cilv014i03	0.766321926	0.635671068	C	1.677161707	0.495009892	0.498929844	0.39418626
31	2	10	14957	No similarity	citb019m13	0.624208978	0.616227631	C	0.796253191	0.558537392	0.613811497	0.528233833
32	8	4	00057	14-3-3, prepronerve growth factor, protein kinase C inhibitor	cilv007d08	0.674860141	0.613501127	C	1.208434593	0.514735031	0.590742638	0.385528304
40	9	6	10326	E-selectin (endothelial leukocyte adhesion molecule 1)	cilv020g19	0.6381338	0.609873093	C	0.676395906	0.379239988	0.604014506	0.892884802
1	14	3	02472	Drosophila melanogaster Elongin B chain A,D,G,J, Homo sapiens RNA polymerase II transcription factor SIII p18 subunit	02472	0.669936902	0.5746236	C	0.662389551	0.284035238	0.452404155	1.280918663
44	13	1	13856	No similarity	cicl051a04	0.570956349	0.519791992	C	0.484827014	0.370354436	0.392288015	1.036355931
25	14	10	02055	Acidic ribosomal protein P1	citb009b17	0.435539574	0.401440292	C	0.708411568	0.336813336	0.460644811	0.236288579
38	11	7	01223	Serine protease SCO-spondin	cilv030l15	0.402096742	0.398700792	C	0.330555218	0.393607921	0.406771595	0.477452234
25	12	3	00564	Non-functional folate-binding protein	cilv003o20	0.416169719	0.393613415	C	0.629474257	0.279103166	0.457393397	0.298708058